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THAPSDRAFT_263492 pathogenesis-related transcription factor [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449274, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_263492
Gene description
pathogenesis-related transcription factor
Locus tag
THAPSDRAFT_263492
Gene type
protein coding
RNA name
pathogenesis-related transcription factor
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_263492 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Sequence:
Chromosome: 9; NC_012072.1 (196244..196758, complement)

Chromosome 9 - NC_012072.1Genomic Context describing neighboring genes Neighboring gene NifU like N terminal domain, iron Neighboring gene pathogenesis-related transcription factor Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012072.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
pathogenesis-related transcription factor
XP_002292401.1
  • Putative pathogenesis-related transcription factor (AP2 domain); similar to ath:At2g28550 T17D12.11; putative AP2 domain transcription factor (model%: 100, hit%: NO HIT LENGTH, score: 149, %id: 31) [Arabidopsis thaliana]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012072.1 Reference assembly

    Range
    196244..196758 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292365.1 → XP_002292401.1  pathogenesis-related transcription factor, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292401.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C7U2
    Conserved Domains (1) summary
    cl00033
    Location:104 → 156
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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