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THAPS_263181 chloroplast protein Cpn21 in A-like protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449248, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_263181
Gene description
chloroplast protein Cpn21 in A-like protein
Locus tag
THAPS_263181
Gene type
protein coding
RNA name
chloroplast protein Cpn21 in A-like protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_263181 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Sequence:
Chromosome: 7; NC_012070.1 (935977..936377)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone cofactor-dependent protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plastid IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
chloroplast protein Cpn21 in A-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    935977..936377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002295793.1 → XP_002295829.1  chloroplast protein Cpn21 in A-like protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295829.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YMZ9
    Conserved Domains (1) summary
    smart00883
    Location:1 → 90
    Cpn10; Chaperonin 10 Kd subunit
Nucleotide Protein
Heading Accession and Version

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