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THAPSDRAFT_20993 heat shock protein HslVU, ATPase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449062, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_20993
Gene description
heat shock protein HslVU, ATPase
Locus tag
THAPSDRAFT_20993
Gene type
protein coding
RNA name
heat shock protein HslVU, ATPase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_20993 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_012064.1 (2439955..2441748)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene carboxyl-terminal protease Neighboring gene hypothetical protein Neighboring gene rab-type small G protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HslUV protease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
heat shock protein HslVU, ATPase
XP_002286395.1
  • [FUNCTION] CHAPERONE SUBUNIT OF A PROTEASOME-LIKE DEGRADATION COMPLEX (BY SIMILARITY). INHIBITS LEUKOTOXIN EXPRESSION.[SUBUNIT] Interacts with hslV (By similarity).[SUBCELLULAR LOCATION] probably mitochondrial(by putative import sequence). [SIMILARITY] BELONGS TO THE CLPX CHAPERONE FAMILY. HSLU

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    2439955..2441748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286359.1 → XP_002286395.1  heat shock protein HslVU, ATPase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286395.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BRY4
    Conserved Domains (4) summary
    cd00009
    Location:146 → 190
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart01086
    Location:448 → 537
    ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
    PRK05201
    Location:106 → 557
    hslU; ATP-dependent protease ATP-binding subunit HslU; Provisional
    pfam07724
    Location:353 → 441
    AAA_2; AAA domain (Cdc48 subfamily)
Nucleotide Protein
Heading Accession and Version

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