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THAPS_263092 subtilisin-like serine protease [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448963, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_263092
Gene description
subtilisin-like serine protease
Locus tag
THAPS_263092
Gene type
protein coding
RNA name
subtilisin-like serine protease
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_263092 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_012070.1 (439767..440654, complement)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene HSF33, heat shock transcription factor DNA-binding domain-containing protein, DNA binding, transcription factor Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
subtilisin-like serine protease
XP_002296079.1
  • Putative subtilisin-like serine protease, similar to At5g58820-68299.m05820 K19M22.2 MZN1.31 subtilisin-like serine protease contains similarity to prepro-cucumisin GI:807698 from [Cucumis melo] (model%: 34, hit%: 49, score: 147, %id: 18) [Arabidopsis thaliana]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    439767..440654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296043.1 → XP_002296079.1  subtilisin-like serine protease, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296079.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YMF0
    Conserved Domains (2) summary
    cd07477
    Location:30 → 258
    Peptidases_S8_Subtilisin_subset; Peptidase S8 family domain in Subtilisin proteins
    pfam00082
    Location:31 → 276
    Peptidase_S8; Subtilase family
Nucleotide Protein
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