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THAPSDRAFT_261285 HSP70 domain-containing protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448686, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_261285
Gene description
HSP70 domain-containing protein
Locus tag
THAPSDRAFT_261285
Gene type
protein coding
RNA name
HSP70 domain-containing protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_261285 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_012065.1 (577445..578993)

Chromosome 2 - NC_012065.1Genomic Context describing neighboring genes Neighboring gene aldo/keto reductase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene translation initiation factor sui1-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012065.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heat shock protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables misfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to unfolded protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chaperone cofactor-dependent protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
HSP70 domain-containing protein
XP_002287220.1
  • Contains InterPro domain #IPR001023 for HSP70 proteins. Also has strong similarity to Pfam model #PF00012 for HSP70 proteins. Similarity to HSP70's from other organisms probably due to the HSP70 domain.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012065.1 Reference assembly

    Range
    577445..578993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002287184.1 → XP_002287220.1  HSP70 domain-containing protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002287220.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BTV4
    Conserved Domains (1) summary
    cd10170
    Location:6 → 353
    HSP70_NBD; Nucleotide-binding domain of the HSP70 family
Nucleotide Protein
Heading Accession and Version

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