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THAPSDRAFT_21190 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448679, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_21190
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_21190
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_21190 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_012065.1 (543797..549693, complement)

Chromosome 2 - NC_012065.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012065.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription export complex 2 IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012065.1 Reference assembly

    Range
    543797..549693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002287678.1 → XP_002287714.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002287714.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BTU0
    Conserved Domains (6) summary
    pfam13634
    Location:156 → 249
    Nucleoporin_FG; Nucleoporin FG repeat region
    pfam13863
    Location:997 → 1152
    DUF4200; Domain of unknown function (DUF4200)
    pfam14073
    Location:979 → 1154
    Cep57_CLD; Centrosome localization domain of Cep57
    cd16269
    Location:1034 → 1045
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:968 → 1057
    GBP_C; Guanylate-binding protein, C-terminal domain
    cl24019
    Location:565 → 879
    CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
Nucleotide Protein
Heading Accession and Version

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