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atpC_1 v-type ATPase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448667, updated on 21-Dec-2023

Summary

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Gene symbol
atpC_1
Gene description
v-type ATPase
Locus tag
THAPSDRAFT_2233
Gene type
protein coding
RNA name
v-type ATPase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See atpC_1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_012065.1 (500147..500762)

Chromosome 2 - NC_012065.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene vacuolar ATP synthase Neighboring gene RM34, ribosomal protein 34 mitochondrial large ribosomal subunit Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012065.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
v-type ATPase
XP_002287204.1
  • presence of defining domains, sequence similarity and phaeodactylum EST support suggest this is a v-type ATPase subunit C

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012065.1 Reference assembly

    Range
    500147..500762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002287168.1 → XP_002287204.1  v-type ATPase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002287204.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BTR9
    Conserved Domains (2) summary
    pfam00137
    Location:94 → 156
    ATP-synt_C; ATP synthase subunit C
    cl00466
    Location:10 → 121
    ATP-synt_C; ATP synthase subunit C
Nucleotide Protein
Heading Accession and Version

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Research Materials