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GMD1 gdp-d-mannose 4,6-dehydratase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448453, updated on 21-Dec-2023

Summary

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Gene symbol
GMD1
Gene description
gdp-d-mannose 4,6-dehydratase
Locus tag
THAPSDRAFT_40586
Gene type
protein coding
RNA name
gdp-d-mannose 4,6-dehydratase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See GMD1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_012068.1 (154903..156857, complement)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-mannose 4,6-dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
gdp-d-mannose 4,6-dehydratase
XP_002290502.1
  • Involved in the synthesis of GDP-L-fucose, catalyzes the reaction: GDP-D-mannose = GDP-4-dehydro-6-deoxy-D-mannose + H2O.; putative; guanosine 5'-diphosphate-D-mannose oxidoreductase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    154903..156857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290466.1 → XP_002290502.1  gdp-d-mannose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290502.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C1P6
    Conserved Domains (2) summary
    PLN02653
    Location:1 → 357
    PLN02653; GDP-mannose 4,6-dehydratase
    pfam16363
    Location:8 → 341
    GDP_Man_Dehyd; GDP-mannose 4,6 dehydratase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials