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THAPSDRAFT_26473 serine threonine protein phosphatase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448225, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_26473
Gene description
serine threonine protein phosphatase
Locus tag
THAPSDRAFT_26473
Gene type
protein coding
RNA name
serine threonine protein phosphatase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_26473 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
3
Sequence:
Chromosome: 22; NC_012085.1 (809776..811191, complement)

Chromosome 22 - NC_012085.1Genomic Context describing neighboring genes Neighboring gene actin-like protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012085.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-serine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
serine threonine protein phosphatase
XP_002295084.1
  • Serine/threonine (S/T) phosphatases catalyse the dephosphorylation of phosphoserine and phosphothreonine residues; contains conserved serine/threonine protein phosphatase.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012085.1 Reference assembly

    Range
    809776..811191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002295048.1 → XP_002295084.1  serine threonine protein phosphatase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295084.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CFV6
    Conserved Domains (2) summary
    PTZ00239
    Location:8 → 304
    PTZ00239; serine/threonine protein phosphatase 2A; Provisional
    cd07415
    Location:7 → 287
    MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials