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THAPSDRAFT_36246 serine threonine phosphatase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448093, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_36246
Gene description
serine threonine phosphatase
Locus tag
THAPSDRAFT_36246
Gene type
protein coding
RNA name
serine threonine phosphatase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_36246 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Sequence:
Chromosome: 9; NC_012072.1 (798305..799165)

Chromosome 9 - NC_012072.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012072.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
serine threonine phosphatase
XP_002292305.1
  • Serine/threonine (S/T) phosphatases catalyse the dephosphorylation of phosphoserine and phosphothreonine residues; contains conserved serine/threonine phosphatase domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012072.1 Reference assembly

    Range
    798305..799165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292269.1 → XP_002292305.1  serine threonine phosphatase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292305.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C8F5
    Conserved Domains (2) summary
    cd00144
    Location:27 → 262
    MPP_PPP_family; phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain
    pfam00149
    Location:28 → 242
    Metallophos; Calcineurin-like phosphoesterase
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials