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THAPSDRAFT_264061 dual specific tyrosine protein phosphatase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7447874, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_264061
Gene description
dual specific tyrosine protein phosphatase
Locus tag
THAPSDRAFT_264061
Gene type
protein coding
RNA name
dual specific tyrosine protein phosphatase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_264061 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
2
Sequence:
Chromosome: 13; NC_012076.1 (851531..852086)

Chromosome 13 - NC_012076.1Genomic Context describing neighboring genes Neighboring gene threonine synthase Neighboring gene RL6, ribosomal protein 6 Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012076.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
dual specific tyrosine protein phosphatase
XP_002293442.1
  • A group of enzymes removing the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle; contains conserved dual-specificity phosphatase domains

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012076.1 Reference assembly

    Range
    851531..852086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293406.2 → XP_002293442.1  dual specific tyrosine protein phosphatase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293442.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CBR9
    Conserved Domains (1) summary
    cl21483
    Location:17 → 135
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
Nucleotide Protein
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