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CSN1 precursor of synthase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7447798, updated on 21-Dec-2023

Summary

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Gene symbol
CSN1
Gene description
precursor of synthase
Locus tag
THAPSDRAFT_11411
Gene type
protein coding
RNA name
precursor of synthase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See CSN1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
2
Sequence:
Chromosome: 20; NC_012083.1 (29093..31078)

Chromosome 20 - NC_012083.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012083.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables citrate (Si)-synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in citrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
precursor of synthase
XP_002294538.1
  • Identification supported by Phaeodactylum cDNA and in good agreement with considerable known sequences. Citric acid cycle enzyme.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012083.1 Reference assembly

    Range
    29093..31078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294502.1 → XP_002294538.1  precursor of synthase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294538.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CEG2
    Conserved Domains (2) summary
    PLN02456
    Location:1 → 473
    PLN02456; citrate synthase
    cl00416
    Location:34 → 465
    CS_ACL-C_CCL; Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A ...
Nucleotide Protein
Heading Accession and Version

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