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TKT1 transketolase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7447630, updated on 21-Dec-2023

Summary

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Gene symbol
TKT1
Gene description
transketolase
Locus tag
THAPSDRAFT_26678
Gene type
protein coding
RNA name
transketolase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See TKT1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_012064.1 (1406706..1409097)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene glyceraldehyde-3-phosphate dehydrogenase precursor Neighboring gene pseudo Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transketolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
transketolase
XP_002286206.1
  • sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate + glycolaldehydetransferase, chloroplastic pentose phosphate pathway, similar to gi|22299413|ref|NP_682660.1| (NC_004113) transketolase [Thermosynechococcus elongatus BP-1] (model%: 92, hit%: 98, score: 1777, %id: 54)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    1406706..1409097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286170.1 → XP_002286206.1  transketolase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286206.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BQU3
    Conserved Domains (4) summary
    PLN02790
    Location:33 → 692
    PLN02790; transketolase
    pfam02779
    Location:387 → 524
    Transket_pyr; Transketolase, pyrimidine binding domain
    pfam02780
    Location:570 → 684
    Transketolase_C; Transketolase, C-terminal domain
    cl01629
    Location:28 → 368
    TPP_enzymes; Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and ...
Nucleotide Protein
Heading Accession and Version

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