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THAPSDRAFT_21002 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7447629, updated on 18-Jun-2017

Summary

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Gene symbol
THAPSDRAFT_21002
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_21002
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_21002 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012064.1 (2470251..2473232, complement)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene cyclin protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    2470251..2473232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286954.1 → XP_002286990.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286990.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BRZ8
    Conserved Domains (4) summary
    pfam05672
    Location:520 → 652
    MAP7; MAP7 (E-MAP-115) family
    cd16269
    Location:598 → 609
    GBP_C; coiled coil [structural motif]
    cl02542
    Location:855 → 886
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    cl20817
    Location:519 → 623
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
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