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THAPSDRAFT_269616 translation factor elongation factor ef-tu [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7447533, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_269616
Gene description
translation factor elongation factor ef-tu
Locus tag
THAPSDRAFT_269616
Gene type
protein coding
RNA name
translation factor elongation factor ef-tu
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_269616 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Sequence:
Chromosome: 12; NC_012075.1 (445949..447966, complement)

Chromosome 12 - NC_012075.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene DNA directed RNA polymerase i, second largest subunit Neighboring gene hypothetical protein Neighboring gene histone H3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012075.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
translation factor elongation factor ef-tu
XP_002293181.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012075.1 Reference assembly

    Range
    445949..447966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293145.1 → XP_002293181.1  translation factor elongation factor ef-tu [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293181.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CA96
    Conserved Domains (4) summary
    PLN03127
    Location:2 → 430
    PLN03127; Elongation factor Tu; Provisional
    cd01884
    Location:45 → 239
    EF_Tu; Elongation Factor Tu (EF-Tu) GTP-binding proteins
    cd03697
    Location:247 → 333
    EFTU_II; Domain II of elongation factor Tu
    cd03707
    Location:338 → 425
    EFTU_III; Domain III of Elongation Factor (EF) Tu
Nucleotide Protein
Heading Accession and Version

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