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THAPSDRAFT_262104 PIP2 phosphodiesterase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7447489, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_262104
Gene description
PIP2 phosphodiesterase
Locus tag
THAPSDRAFT_262104
Gene type
protein coding
RNA name
PIP2 phosphodiesterase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_262104 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_012067.1 (645865..646388, complement)

Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene kinesin motor subunit-like protein Neighboring gene PIP2 phosphodiesterase Neighboring gene hypothetical protein Neighboring gene ribonuclease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012067.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
PIP2 phosphodiesterase
XP_002289698.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012067.1 Reference assembly

    Range
    645865..646388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289662.1 → XP_002289698.1  PIP2 phosphodiesterase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289698.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C1F7
    Conserved Domains (1) summary
    cl14615
    Location:3 → 158
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
Nucleotide Protein
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Molecular Biology Databases
Research Materials