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GDH_2 glutamate dehydrogenase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7447481, updated on 21-Dec-2023

Summary

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Gene symbol
GDH_2
Gene description
glutamate dehydrogenase
Locus tag
THAPSDRAFT_26192
Gene type
protein coding
RNA name
glutamate dehydrogenase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See GDH_2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_012067.1 (611707..613514)

Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012067.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutamate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
glutamate dehydrogenase
XP_002289225.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012067.1 Reference assembly

    Range
    611707..613514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289189.1 → XP_002289225.1  glutamate dehydrogenase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289225.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C1E2
    Conserved Domains (3) summary
    PTZ00079
    Location:81 → 504
    PTZ00079; NADP-specific glutamate dehydrogenase; Provisional
    pfam02812
    Location:128 → 256
    ELFV_dehydrog_N; Glu/Leu/Phe/Val dehydrogenase, dimerization domain
    cl21454
    Location:278 → 502
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
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