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THAPSDRAFT_262396 bilin:ferredoxin oxidoreductase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7447270, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_262396
Gene description
bilin:ferredoxin oxidoreductase
Locus tag
THAPSDRAFT_262396
Gene type
protein coding
RNA name
bilin:ferredoxin oxidoreductase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_262396 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_012068.1 (213510..214123)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cobalt ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phytochromobilin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
bilin:ferredoxin oxidoreductase
XP_002290061.1
  • This could be involved in phytochrome chromophore biosysnthesis.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    213510..214123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290025.1 → XP_002290061.1  bilin:ferredoxin oxidoreductase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290061.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C1S2
    Conserved Domains (1) summary
    cl07930
    Location:1 → 193
    Fe_bilin_red; Ferredoxin-dependent bilin reductase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials