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THAPSDRAFT_264016 calcium transporting rt-atpase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446939, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_264016
Gene description
calcium transporting rt-atpase
Locus tag
THAPSDRAFT_264016
Gene type
protein coding
RNA name
calcium transporting rt-atpase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_264016 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Sequence:
Chromosome: 13; NC_012076.1 (557381..560555, complement)

Chromosome 13 - NC_012076.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012076.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
calcium transporting rt-atpase
XP_002293582.1
  • Possible calcium transporting atp-ase, cation transport

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012076.1 Reference assembly

    Range
    557381..560555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293546.1 → XP_002293582.1  calcium transporting rt-atpase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293582.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CBH1
    Conserved Domains (6) summary
    cd01427
    Location:558 → 713
    HAD_like; Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, ...
    TIGR01517
    Location:1 → 957
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam00122
    Location:121 → 326
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:779 → 954
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:1 → 58
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:388 → 482
    Cation_ATPase; Cation transport ATPase (P-type)
Nucleotide Protein
Heading Accession and Version

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