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THAPSDRAFT_36477 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446846, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_36477
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_36477
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 10
Exon count:
1
Sequence:
Chromosome: 10; NC_012073.1 (550816..552306)

Chromosome 10 - NC_012073.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene amino acid transporter Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012073.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012073.1 Reference assembly

    Range
    550816..552306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292616.1 → XP_002292652.1  predicted protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292652.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C9F9
    Conserved Domains (3) summary
    TIGR01166
    Location:3 → 188
    cbiO; cobalt transport protein ATP-binding subunit
    pfam01061
    Location:322 → 497
    ABC2_membrane; ABC-2 type transporter
    cl21455
    Location:1 → 213
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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