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THAPSDRAFT_260891 small nuclear ribonucleoprotein prp4 [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446840, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_260891
Gene description
small nuclear ribonucleoprotein prp4
Locus tag
THAPSDRAFT_260891
Gene type
protein coding
RNA name
small nuclear ribonucleoprotein prp4
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_260891 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_012064.1 (1160661..1162482)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene n-acetylglucosaminyl-phosphatidylinositol biosynthetic protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U4 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
small nuclear ribonucleoprotein prp4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    1160661..1162482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286115.1 → XP_002286151.1  small nuclear ribonucleoprotein prp4, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286151.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BQI8
    Conserved Domains (4) summary
    COG2319
    Location:187 → 463
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:186 → 463
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08799
    Location:41 → 69
    PRP4; pre-mRNA processing factor 4 (PRP4) like
    sd00039
    Location:260 → 301
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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