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THAPSDRAFT_33682 RNA polymerase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446762, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_33682
Gene description
RNA polymerase
Locus tag
THAPSDRAFT_33682
Gene type
protein coding
RNA name
RNA polymerase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_33682 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_012067.1 (323618..324720)

Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene exportin1 Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012067.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sigma factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
RNA polymerase
XP_002289172.1
  • may be chloroplast-localized

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012067.1 Reference assembly

    Range
    323618..324720
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289136.1 → XP_002289172.1  RNA polymerase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289172.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C130
    Conserved Domains (5) summary
    TIGR02997
    Location:1 → 303
    Sig70-cyanoRpoD; RNA polymerase sigma factor, cyanobacterial RpoD-like family
    pfam00140
    Location:1 → 29
    Sigma70_r1_2; Sigma-70 factor, region 1.2
    pfam04539
    Location:160 → 239
    Sigma70_r3; Sigma-70 region 3
    pfam04542
    Location:81 → 151
    Sigma70_r2; Sigma-70 region 2
    pfam04545
    Location:254 → 303
    Sigma70_r4; Sigma-70, region 4
Nucleotide Protein
Heading Accession and Version

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