U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cdc48-2 cell division cycle protein 48 [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446469, updated on 25-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
cdc48-2
Gene description
cell division cycle protein 48
Locus tag
THAPSDRAFT_40725
Gene type
protein coding
RNA name
cell division cycle protein 48
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cdc48-2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_012068.1 (964450..967632, complement)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene dimethyladenosine transferase Neighboring gene peptidyl dipeptidase Neighboring gene v-type h-atpase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic spindle disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde protein transport, ER to cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of VCP-NPL4-UFD1 AAA ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
cell division cycle protein 48
XP_002290667.1
  • Most similar to fungal and plant homologues

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    964450..967632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290631.1 → XP_002290667.1  cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290667.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C2N8
    Conserved Domains (4) summary
    smart01072
    Location:231 → 290
    CDC48_2; Cell division protein 48 (CDC48) domain 2
    smart01073
    Location:120 → 195
    CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
    TIGR01243
    Location:121 → 869
    CDC48; AAA family ATPase, CDC48 subfamily
    pfam00004
    Location:619 → 752
    AAA; ATPase family associated with various cellular activities (AAA)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials