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THAPSDRAFT_34221 RNA helicase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446465, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_34221
Gene description
RNA helicase
Locus tag
THAPSDRAFT_34221
Gene type
protein coding
RNA name
RNA helicase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_34221 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_012068.1 (951127..952848)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
RNA helicase
XP_002290224.1
  • Putative RNA helicase DEAD/DEAH family, supported by cDNA. involved in RNA processing

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    951127..952848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290188.1 → XP_002290224.1  RNA helicase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290224.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C2N1
    Conserved Domains (3) summary
    PTZ00424
    Location:1 → 409
    PTZ00424; helicase 45; Provisional
    pfam00271
    Location:277 → 365
    Helicase_C; Helicase conserved C-terminal domain
    cl21455
    Location:2 → 221
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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