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RL44 RL44, ribosomal protein 44 60S large ribosomal subunit [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446429, updated on 21-Dec-2023

Summary

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Gene symbol
RL44
Gene description
RL44, ribosomal protein 44 60S large ribosomal subunit
Locus tag
THAPSDRAFT_5259
Gene type
protein coding
RNA name
RL44, ribosomal protein 44 60S large ribosomal subunit
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See RL44 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_012068.1 (745275..745589)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Rad51/RecA-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
RL44, ribosomal protein 44 60S large ribosomal subunit
XP_002290188.1
  • RL44, ribosomal protein 44, 60S large ribosomal subunit, nuclear, translation, protein biosynthesis

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    745275..745589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290152.1 → XP_002290188.1  RL44, ribosomal protein 44 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290188.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C2E8
    Conserved Domains (1) summary
    PTZ00157
    Location:1 → 86
    PTZ00157; 60S ribosomal protein L36a; Provisional
Nucleotide Protein
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