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THAPSDRAFT_268863 ABC transporter [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446412, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_268863
Gene description
ABC transporter
Locus tag
THAPSDRAFT_268863
Gene type
protein coding
RNA name
ABC transporter
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_268863 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_012068.1 (665711..668531, complement)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ABC transporter
XP_002290605.1
  • Strong hits to ABC transporters and Interpro domains.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    665711..668531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290569.1 → XP_002290605.1  ABC transporter [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290605.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C2B9
    Conserved Domains (3) summary
    cd03223
    Location:469 → 689
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    COG4178
    Location:97 → 698
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
    cl00549
    Location:123 → 349
    ABC_membrane; ABC transporter transmembrane region
Nucleotide Protein
Heading Accession and Version

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