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THAPSDRAFT_263019 tocopherol cyclase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446329, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_263019
Gene description
tocopherol cyclase
Locus tag
THAPSDRAFT_263019
Gene type
protein coding
RNA name
tocopherol cyclase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_263019 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Sequence:
Chromosome: 6; NC_012069.1 (1769865..1771484, complement)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tocopherol cyclase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
tocopherol cyclase
XP_002291625.1
  • Putative tocopherol cyclase; involved in tocopherol synthesis; similar to gi|24212569|sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplast precursor (Vitamin E deficient 1) (Sucrose export defective 1) (model%: 99, hit%: 82, score: 704, %id: 38) [Arabidopsis thaliana]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    1769865..1771484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291589.1 → XP_002291625.1  tocopherol cyclase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291625.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C4J0
    Conserved Domains (1) summary
    PLN02818
    Location:1 → 448
    PLN02818; tocopherol cyclase
Nucleotide Protein
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Molecular Biology Databases
Research Materials