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THAPSDRAFT_33926 obtusifoliol 14-alpha demethylase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446102, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_33926
Gene description
obtusifoliol 14-alpha demethylase
Locus tag
THAPSDRAFT_33926
Gene type
protein coding
RNA name
obtusifoliol 14-alpha demethylase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_33926 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_012067.1 (1240706..1242204, complement)

Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012067.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
obtusifoliol 14-alpha demethylase
XP_002289823.1
  • This sequence has very high similarity to obtusifoliol 14-alpha demethylase, also known as cytochrome P450 51. There are no corresponding ESTs, but hits to cytochrome P450 from Pfam and to demethylases from hsp groupings support this annotation.; cytochrome P450 51, CYPL1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012067.1 Reference assembly

    Range
    1240706..1242204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289787.1 → XP_002289823.1  obtusifoliol 14-alpha demethylase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289823.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BZI1
    Conserved Domains (1) summary
    cl12078
    Location:1 → 431
    p450; Cytochrome P450
Nucleotide Protein
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