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THAPSDRAFT_263669 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7445888, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_263669
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_263669
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_263669 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Sequence:
Chromosome: 10; NC_012073.1 (526991..528294, complement)

Chromosome 10 - NC_012073.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012073.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in recombinational repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002292839.1
  • No similarity to any known sequences.; hypothetical gene

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012073.1 Reference assembly

    Range
    526991..528294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292803.1 → XP_002292839.1  hypothetical protein THAPSDRAFT_263669, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292839.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C9E9
    Conserved Domains (3) summary
    COG0210
    Location:3 → 259
    UvrD; Superfamily I DNA or RNA helicase [Replication, recombination and repair]
    pfam13538
    Location:205 → 258
    UvrD_C_2; UvrD-like helicase C-terminal domain
    cl21455
    Location:1 → 87
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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