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APA1 alpha subunit of tetrameric clathrin adaptor complex AP1 [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7445750, updated on 21-Dec-2023

Summary

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Gene symbol
APA1
Gene description
alpha subunit of tetrameric clathrin adaptor complex AP1
Locus tag
THAPSDRAFT_263997
Gene type
protein coding
RNA name
alpha subunit of tetrameric clathrin adaptor complex AP1
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See APA1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Sequence:
Chromosome: 13; NC_012076.1 (415306..418250, complement)

Chromosome 13 - NC_012076.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012076.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-2 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
alpha subunit of tetrameric clathrin adaptor complex AP1
XP_002293551.1
  • AP1 alpha subunit, alpha1-adaptin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012076.1 Reference assembly

    Range
    415306..418250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293515.1 → XP_002293551.1  alpha subunit of tetrameric clathrin adaptor complex AP1, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293551.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CBB0
    Conserved Domains (3) summary
    pfam01602
    Location:19 → 596
    Adaptin_N; Adaptin N terminal region
    pfam02296
    Location:826 → 927
    Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
    pfam02883
    Location:716 → 805
    Alpha_adaptinC2; Adaptin C-terminal domain
Nucleotide Protein
Heading Accession and Version

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