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THAPSDRAFT_260841 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7445665, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_260841
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_260841
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_260841 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_012064.1 (883342..885014, complement)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene guanine nucleotide binding protein beta subunit-like protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FMN binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADPH-hemoprotein reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002286671.1
  • Good EST evidence for 3' end. Hits to Pfam and hsp domains at 5' end.; hypothetical protein similar to NAD-dependent oxidoreductases, possibly nadph-dependent cytochrome P450

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    883342..885014 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286635.1 → XP_002286671.1  hypothetical protein THAPSDRAFT_260841, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286671.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BQ73
    Conserved Domains (2) summary
    pfam00258
    Location:1 → 132
    Flavodoxin_1; Flavodoxin
    cl06868
    Location:186 → 526
    FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...
Nucleotide Protein
Heading Accession and Version

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