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THAPSDRAFT_260758 tubulin-specific chaperone d [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7445115, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_260758
Gene description
tubulin-specific chaperone d
Locus tag
THAPSDRAFT_260758
Gene type
protein coding
RNA name
tubulin-specific chaperone d
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_260758 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_012064.1 (207008..211074)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables beta-tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in post-chaperonin tubulin folding pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tubulin complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
tubulin-specific chaperone d
XP_002285972.1
  • based on sequence similarity

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    207008..211074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002285936.1 → XP_002285972.1  tubulin-specific chaperone d, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002285972.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BSV8
    Conserved Domains (3) summary
    pfam12612
    Location:859 → 1049
    TFCD_C; Tubulin folding cofactor D C terminal
    sd00044
    Location:321 → 349
    HEAT; HEAT repeat [structural motif]
    cl19887
    Location:322 → 551
    TFCD_C; Tubulin folding cofactor D C terminal
Nucleotide Protein
Heading Accession and Version

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Research Materials