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THAPSDRAFT_268124 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7445090, updated on 18-Sep-2024

Summary

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Gene symbol
THAPSDRAFT_268124
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_268124
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_268124 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_012064.1 (2624696..2626237, complement)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Phospholipid:diacylglycerol acyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables short-chain carboxylesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002287024.1
  • Putative protein of unknown function containing an esterase/lipase domain; some similarities togi|22955202|gb|ZP_00003003.1| (NZ_AAAY01000001) hypothetical protein [Nitrosomonas europaea] (model%: 52, hit%: 70, score: 251, %id: 31) [Nitrosomonas europaea]; EST support; putative protein of unknown function containing an esterase/lipase domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    2624696..2626237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286988.1 → XP_002287024.1  hypothetical protein THAPSDRAFT_268124 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002287024.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BS62
    Conserved Domains (1) summary
    cl21494
    Location:88 → 461
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version

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