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THAPSDRAFT_38512 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444850, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_38512
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_38512
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_38512 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
2
Sequence:
Chromosome: 20; NC_012083.1 (32415..33212, complement)

Chromosome 20 - NC_012083.1Genomic Context describing neighboring genes Neighboring gene precursor of synthase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012083.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002294669.1
  • Putative protein of unknown function with similarities to hydrolases; e.g. At1g13820-68300.m01401 F16A14.4 unknown protein contains similarity to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase GI:2822275 from [Pseudomonas putida] (model%: 88, hit%: 73, score: 434, %id: 36) [Arabidopsis thaliana]; putative protein of unknown function with similarity to hydrolases

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012083.1 Reference assembly

    Range
    32415..33212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294633.1 → XP_002294669.1  hypothetical protein THAPSDRAFT_38512, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294669.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CEG4
    Conserved Domains (2) summary
    COG0596
    Location:9 → 255
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    pfam12695
    Location:9 → 236
    Abhydrolase_5; Alpha/beta hydrolase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials