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THAPSDRAFT_21268 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444622, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_21268
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_21268
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_21268 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_012065.1 (943302..948526, complement)

Chromosome 2 - NC_012065.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene RL14, ribosomal protein 14 60S large ribosomal subunit Neighboring gene probable phosphoribosyl-amp cyclohydrolase Neighboring gene hypothetical protein Neighboring gene probable 3-oxoacyl-reductase domain containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012065.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012065.1 Reference assembly

    Range
    943302..948526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002287775.1 → XP_002287811.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002287811.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BUB0
    Conserved Domains (6) summary
    PRK12372
    Location:539 → 733
    PRK12372; ribonuclease III; Reviewed
    cd00020
    Location:1284 → 1410
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam02008
    Location:525 → 564
    zf-CXXC; CXXC zinc finger domain
    cd15541
    Location:306 → 347
    PHD_TIF1_like; PHD finger found in the transcriptional intermediary factor 1 (TIF1) family and similar proteins
    sd00043
    Location:894 → 927
    ARM; armadillo repeat [structural motif]
    cl22851
    Location:387 → 435
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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