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THAPSDRAFT_263010 ATP dependent DNA ligase 1 [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444591, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_263010
Gene description
ATP dependent DNA ligase 1
Locus tag
THAPSDRAFT_263010
Gene type
protein coding
RNA name
ATP dependent DNA ligase 1
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_263010 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Sequence:
Chromosome: 6; NC_012069.1 (1734731..1736967)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene eh domain-containing protein Neighboring gene hypothetical protein Neighboring gene ras-related protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to X-ray IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to gamma radiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ku70:Ku80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ATP dependent DNA ligase 1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    1734731..1736967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291186.2 → XP_002291222.1  ATP dependent DNA ligase 1 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291222.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C4H9
    Conserved Domains (2) summary
    cl00057
    Location:112 → 257
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl02666
    Location:255 → 530
    KU; Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen ...
Nucleotide Protein
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