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THAPSDRAFT_36614 diaminopimelate epimerase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444528, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_36614
Gene description
diaminopimelate epimerase
Locus tag
THAPSDRAFT_36614
Gene type
protein coding
RNA name
diaminopimelate epimerase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 11, map: unlocalized
Exon count:
4

NW_002243504.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_002243504.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables diaminopimelate epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lysine biosynthetic process via diaminopimelate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
diaminopimelate epimerase
XP_002296516.1
  • based on presence of defining domains and sequence similarity appears to encode diaminopimelate epimerase involved in biosynthesis of lysine from aspartate

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_002243504.1 Reference assembly

    Range
    127276..128725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296480.1 → XP_002296516.1  diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296516.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8LBN1
    Conserved Domains (2) summary
    PLN02536
    Location:54 → 322
    PLN02536; diaminopimelate epimerase
    pfam01678
    Location:194 → 314
    DAP_epimerase; Diaminopimelate epimerase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials