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THAPSDRAFT_25495 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444338, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_25495
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_25495
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_25495 in Genome Data Viewer
Location:
chromosome: 19, map: unlocalized
Exon count:
7

NW_002243508.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_002243508.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables malonate-semialdehyde dehydrogenase (acetylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in thymine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in valine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002297077.1
  • Somewhat similar to methylmalonate-semialdehyde dehydrogenase, mitochondrial precursor. Partial cDNA support.; unknown protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_002243508.1 Reference assembly

    Range
    545213..547541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002297041.1 → XP_002297077.1  hypothetical protein THAPSDRAFT_25495 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002297077.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8LDG4
    Conserved Domains (2) summary
    cd07085
    Location:55 → 548
    ALDH_F6_MMSDH; Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2
    PLN02466
    Location:1 → 504
    PLN02466; aldehyde dehydrogenase family 2 member
Nucleotide Protein
Heading Accession and Version

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