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Lhcx6_1 fucoxanthin chlorophyll a/c protein -LI818 clade [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444279, updated on 21-Dec-2023

Summary

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Gene symbol
Lhcx6_1
Gene description
fucoxanthin chlorophyll a/c protein -LI818 clade
Locus tag
THAPS_30385
Gene type
protein coding
RNA name
fucoxanthin chlorophyll a/c protein -LI818 clade
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See Lhcx6_1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
2
Sequence:
Chromosome: 18; NC_012081.1 (408531..409464, complement)

Chromosome 18 - NC_012081.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012081.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis, light harvesting in photosystem I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
fucoxanthin chlorophyll a/c protein -LI818 clade
XP_002295578.1
  • Member of LHC superfamily. Closest match to Cyclotella homologs of LI818.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012081.1 Reference assembly

    Range
    408531..409464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002295542.1 → XP_002295578.1  fucoxanthin chlorophyll a/c protein -LI818 clade [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295578.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YLU3
    Conserved Domains (1) summary
    cl02879
    Location:1 → 188
    Chloroa_b-bind; Chlorophyll A-B binding protein
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
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