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THAPSDRAFT_25248 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444201, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_25248
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_25248
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_25248 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
4
Sequence:
Chromosome: 17; NC_012080.1 (273298..277418, complement)

Chromosome 17 - NC_012080.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene mercuric reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012080.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012080.1 Reference assembly

    Range
    273298..277418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294442.1 → XP_002294478.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294478.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CE33
    Conserved Domains (2) summary
    pfam09805
    Location:1031 → 1085
    Nop25; Nucleolar protein 12 (25kDa)
    cl09326
    Location:17 → 652
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins
Nucleotide Protein
Heading Accession and Version

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