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THAPS_269257 subtilisin-like serine protease [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444165, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_269257
Gene description
subtilisin-like serine protease
Locus tag
THAPS_269257
Gene type
protein coding
RNA name
subtilisin-like serine protease
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_269257 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Sequence:
Chromosome: 7; NC_012070.1 (1152897..1154856, complement)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
subtilisin-like serine protease
XP_002296222.1
  • gi|19570340|dbj|BAB86297.1| (AB071535) alkaline serine protease IV [Alteromonas sp. O-7] (model%: 68, hit%: 55, score: 676, %id: 48) [Alteromonas sp. O-7]; EST support

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    1152897..1154856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296186.2 → XP_002296222.1  subtilisin-like serine protease [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296222.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YN83
    Conserved Domains (2) summary
    cd07477
    Location:172 → 400
    Peptidases_S8_Subtilisin_subset; Peptidase S8 family domain in Subtilisin proteins
    pfam00082
    Location:173 → 416
    Peptidase_S8; Subtilase family
Nucleotide Protein
Heading Accession and Version

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