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THAPSDRAFT_37662 cation transporting ATPase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444001, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_37662
Gene description
cation transporting ATPase
Locus tag
THAPSDRAFT_37662
Gene type
protein coding
RNA name
cation transporting ATPase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_37662 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
12
Sequence:
Chromosome: 15; NC_012078.1 (55950..59894)

Chromosome 15 - NC_012078.1Genomic Context describing neighboring genes Neighboring gene EPK 2, camp-dependent protein kinase Neighboring gene adenosine deaminase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012078.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
cation transporting ATPase
XP_002294029.1
  • P-type (or E1-E2-type) ATPases constitute a superfamily of cation transport enzymes, present both in prokaryota and eukaryota, whose members mediate membrane flux of all common biologically relevant cations

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012078.1 Reference assembly

    Range
    55950..59894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293993.1 → XP_002294029.1  cation transporting ATPase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294029.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CD04
    Conserved Domains (6) summary
    smart00831
    Location:2 → 56
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    COG4087
    Location:693 → 752
    COG4087; Soluble P-type ATPase [General function prediction only]
    TIGR01116
    Location:35 → 995
    ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
    pfam00122
    Location:70 → 333
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:799 → 992
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam13246
    Location:412 → 530
    Cation_ATPase; Cation transport ATPase (P-type)
Nucleotide Protein
Heading Accession and Version

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