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THAPSDRAFT_25050 ArfGAP [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443962, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_25050
Gene description
ArfGAP
Locus tag
THAPSDRAFT_25050
Gene type
protein coding
RNA name
ArfGAP
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_25050 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
1
Sequence:
Chromosome: 15; NC_012078.1 (705837..707866, complement)

Chromosome 15 - NC_012078.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012078.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPI coating of Golgi vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ArfGAP

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012078.1 Reference assembly

    Range
    705837..707866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294244.1 → XP_002294280.1  ArfGAP [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294280.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CDC5
    Conserved Domains (2) summary
    pfam01412
    Location:15 → 143
    ArfGap; Putative GTPase activating protein for Arf
    pfam12695
    Location:362 → 560
    Abhydrolase_5; Alpha/beta hydrolase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials