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THAPSDRAFT_264332 guanyl nucleotide exchange factor [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443957, updated on 18-Jun-2017

Summary

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Gene symbol
THAPSDRAFT_264332
Gene description
guanyl nucleotide exchange factor
Locus tag
THAPSDRAFT_264332
Gene type
protein coding
RNA name
guanyl nucleotide exchange factor
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_264332 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
2
Sequence:
Chromosome: 15; NC_012078.1 (687578..688348)

Chromosome 15 - NC_012078.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012078.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Names
guanyl nucleotide exchange factor
XP_002294123.1
  • Contains RCC1 repeats. RCC1 (regulator of chromosome condensation 1) binds chromatin and serves as GEF for Ran-type small GTPases; however, RCC1 repeats are found in other GEFS as well (not a Ran-specific feature)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012078.1 Reference assembly

    Range
    687578..688348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294087.1 → XP_002294123.1  guanyl nucleotide exchange factor, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294123.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CDB6
    Conserved Domains (2) summary
    pfam00415
    Location:3 → 52
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam13540
    Location:196 → 225
    RCC1_2; Regulator of chromosome condensation (RCC1) repeat
Nucleotide Protein
Heading Accession and Version

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