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THAPSDRAFT_38767 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443924, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_38767
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_38767
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_38767 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
1
Sequence:
Chromosome: 22; NC_012085.1 (708518..708679)

Chromosome 22 - NC_012085.1Genomic Context describing neighboring genes Neighboring gene papain cysteine protease Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012085.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012085.1 Reference assembly

    Range
    708518..708679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294872.1 → XP_002294908.1  predicted protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294908.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CFT4
    Conserved Domains (1) summary
    cl23744
    Location:1 → 54
    Peptidase_C1; C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some ...
Nucleotide Protein
Heading Accession and Version

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Research Materials