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THAPSDRAFT_38768 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443885, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_38768
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_38768
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_38768 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
1
Sequence:
Chromosome: 22; NC_012085.1 (495322..495636)

Chromosome 22 - NC_012085.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene MYB DNA binding protein/ transcription factor-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012085.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012085.1 Reference assembly

    Range
    495322..495636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294833.1 → XP_002294869.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294869.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CFL2
    Conserved Domains (3) summary
    smart00717
    Location:11 → 59
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:63 → 104
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:12 → 74
    Myb_DNA-bind_6; Myb-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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