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THAPSDRAFT_33055 arogenate dehydrogenase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443834, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_33055
Gene description
arogenate dehydrogenase
Locus tag
THAPSDRAFT_33055
Gene type
protein coding
RNA name
arogenate dehydrogenase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_33055 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_012066.1 (2348934..2349842)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arogenate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables prephenate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables prephenate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tyrosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
arogenate dehydrogenase
XP_002288619.1
  • may be involved in tyrosine biosynthesis

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    2348934..2349842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288583.1 → XP_002288619.1  arogenate dehydrogenase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288619.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BWL6
    Conserved Domains (2) summary
    PLN02256
    Location:1 → 268
    PLN02256; arogenate dehydrogenase
    COG0287
    Location:1 → 268
    TyrA; Prephenate dehydrogenase [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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