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HBP7 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443821, updated on 21-Dec-2023

Summary

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Gene symbol
HBP7
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_261967
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See HBP7 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_012066.1 (2282287..2282496)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Chk2, checkpoint kinase Neighboring gene hypothetical protein Neighboring gene ankyrn related animal-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002288601.1
  • homeobox protein similarity, DNA binding, transcription factor; homeobox protein similarity, DNA binding, transcription factor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    2282287..2282496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288565.1 → XP_002288601.1  hypothetical protein THAPSDRAFT_261967, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288601.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BWI6
    Conserved Domains (1) summary
    pfam05920
    Location:28 → 64
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
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Gene LinkOut

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Research Materials