U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CLPB2 member of the clp superfamily, regulatory beta subunit [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443689, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
CLPB2
Gene description
member of the clp superfamily, regulatory beta subunit
Locus tag
THAPSDRAFT_264776
Gene type
protein coding
RNA name
member of the clp superfamily, regulatory beta subunit
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CLPB2 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
7
Sequence:
Chromosome: 22; NC_012085.1 (245150..248403, complement)

Chromosome 22 - NC_012085.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene pseudo Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012085.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
member of the clp superfamily, regulatory beta subunit
XP_002295000.1
  • Clp proteins are involved in protein degradation, chaperone function and heat shock response. The given gene by similarity seems to be involved in protein degradation. It is ost similar to cyanobacterial beta subunits. At least 6 more regulative subunits are in the T. pseudonana genome.

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012085.1 Reference assembly

    Range
    245150..248403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294964.1 → XP_002295000.1  member of the clp superfamily, regulatory beta subunit [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295000.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CFD1
    Conserved Domains (5) summary
    cd00009
    Location:201 → 357
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    TIGR03346
    Location:11 → 887
    chaperone_ClpB; ATP-dependent chaperone ClpB
    pfam02861
    Location:105 → 155
    Clp_N; Clp amino terminal domain, pathogenicity island component
    pfam07724
    Location:631 → 793
    AAA_2; AAA domain (Cdc48 subfamily)
    pfam10431
    Location:800 → 880
    ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials