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THAPSDRAFT_262844 heat shock protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443625, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_262844
Gene description
heat shock protein
Locus tag
THAPSDRAFT_262844
Gene type
protein coding
RNA name
heat shock protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_262844 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Sequence:
Chromosome: 6; NC_012069.1 (876542..876935)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cristae formation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
heat shock protein
XP_002291063.1
  • Putative heat shock protein most similar to At3g47940-68298.m04471 T17F15.190 heat shock protein-like protein heat-shock protein hsp40, Homo sapiens, PIR2:JN0912 with an evalue of 2e-11. It also contains InterPro domain #IPR001623, which is a DnaJ N-terminal domain. Also contains reasonable similarity to Pfam model #PF00226 for a DnaJ domain.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    876542..876935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291027.1 → XP_002291063.1  heat shock protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291063.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C5R6
    Conserved Domains (1) summary
    pfam00226
    Location:19 → 102
    DnaJ; DnaJ domain
Nucleotide Protein
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